\section{NFsim Class List}
Here are the classes, structs, unions and interfaces with brief descriptions:\begin{CompactList}
\item\contentsline{section}{{\bf NFcore::AddMoleculeTransform} }{\pageref{classNFcore_1_1AddMoleculeTransform}}{}
\item\contentsline{section}{{\bf NFcore::BasicRxnClass} }{\pageref{classNFcore_1_1BasicRxnClass}}{}
\item\contentsline{section}{{\bf NFcore::BindingSeparateComplexTransform} }{\pageref{classNFcore_1_1BindingSeparateComplexTransform}}{}
\item\contentsline{section}{{\bf NFcore::BindingTransform} }{\pageref{classNFcore_1_1BindingTransform}}{}
\item\contentsline{section}{{\bf NFcore::Complex} (Container to dynamically keep track of all system complexes )}{\pageref{classNFcore_1_1Complex}}{}
\item\contentsline{section}{{\bf NFinput::component} (Maintains information about a \doxyref{component}{p.}{classNFinput_1_1component} of a TemplateMolecule )}{\pageref{classNFinput_1_1component}}{}
\item\contentsline{section}{{\bf NFcore::DecrementStateTransform} }{\pageref{classNFcore_1_1DecrementStateTransform}}{}
\item\contentsline{section}{{\bf NFcore::DORRxnClass} }{\pageref{classNFcore_1_1DORRxnClass}}{}
\item\contentsline{section}{{\bf NFcore::DumpAllComplexes} }{\pageref{classNFcore_1_1DumpAllComplexes}}{}
\item\contentsline{section}{{\bf NFcore::DumpMoleculeType} }{\pageref{classNFcore_1_1DumpMoleculeType}}{}
\item\contentsline{section}{{\bf NFcore::EmptyTransform} }{\pageref{classNFcore_1_1EmptyTransform}}{}
\item\contentsline{section}{{\bf NFcore::FuncFactory} (Parses mathmatical functions that can be easily used anywhere )}{\pageref{classNFcore_1_1FuncFactory}}{}
\item\contentsline{section}{{\bf NFcore::FunctionalRxnClass} }{\pageref{classNFcore_1_1FunctionalRxnClass}}{}
\item\contentsline{section}{{\bf NFcore::GlobalFunction} (Defines functions to be used globally in a simulation )}{\pageref{classNFcore_1_1GlobalFunction}}{}
\item\contentsline{section}{{\bf NFcore::IncrementStateTransform} }{\pageref{classNFcore_1_1IncrementStateTransform}}{}
\item\contentsline{section}{{\bf IsInWrongComplex} }{\pageref{classIsInWrongComplex}}{}
\item\contentsline{section}{{\bf NFcore::LocalFunction} }{\pageref{classNFcore_1_1LocalFunction}}{}
\item\contentsline{section}{{\bf NFcore::LocalFunctionReference} }{\pageref{classNFcore_1_1LocalFunctionReference}}{}
\item\contentsline{section}{{\bf NFcore::MapGenerator} (Knows how to assign mappings in a \doxyref{MappingSet}{p.}{classNFcore_1_1MappingSet} to a particular \doxyref{Molecule}{p.}{classNFcore_1_1Molecule} )}{\pageref{classNFcore_1_1MapGenerator}}{}
\item\contentsline{section}{{\bf NFcore::Mapping} (Keeps a pointer to a molecule and remembers a single component to act on )}{\pageref{classNFcore_1_1Mapping}}{}
\item\contentsline{section}{{\bf NFcore::MappingSet} (Keeps a list of mappings needed by a particular list of reactants )}{\pageref{classNFcore_1_1MappingSet}}{}
\item\contentsline{section}{{\bf NFcore::MMRxnClass} }{\pageref{classNFcore_1_1MMRxnClass}}{}
\item\contentsline{section}{{\bf NFcore::Molecule} (Each molecule in the system is represented by an instance of this )}{\pageref{classNFcore_1_1Molecule}}{}
\item\contentsline{section}{{\bf NFcore::MoleculeList} (Keeps a set of molecules neatly for a \doxyref{MoleculeType}{p.}{classNFcore_1_1MoleculeType} )}{\pageref{classNFcore_1_1MoleculeList}}{}
\item\contentsline{section}{{\bf NFcore::MoleculeType} (Keeps track of the types of molecules that can exist )}{\pageref{classNFcore_1_1MoleculeType}}{}
\item\contentsline{section}{{\bf MTRand} }{\pageref{classMTRand}}{}
\item\contentsline{section}{{\bf MTRand53} }{\pageref{classMTRand53}}{}
\item\contentsline{section}{{\bf MTRand\_\-closed} }{\pageref{classMTRand__closed}}{}
\item\contentsline{section}{{\bf MTRand\_\-int32} }{\pageref{classMTRand__int32}}{}
\item\contentsline{section}{{\bf MTRand\_\-open} }{\pageref{classMTRand__open}}{}
\item\contentsline{section}{{\bf NFcore::Observable} (Tracks the counts of predefined observables in the simulation )}{\pageref{classNFcore_1_1Observable}}{}
\item\contentsline{section}{{\bf NFcore::Outputter} }{\pageref{classNFcore_1_1Outputter}}{}
\item\contentsline{section}{{\bf NFcore::ReactantList} (Maintains a list of MappingSets needed by \doxyref{ReactionClass}{p.}{classNFcore_1_1ReactionClass} )}{\pageref{classNFcore_1_1ReactantList}}{}
\item\contentsline{section}{{\bf NFcore::ReactantTree} (Maintains a tree of MappingSets needed by Distribution of Rates Reactions )}{\pageref{classNFcore_1_1ReactantTree}}{}
\item\contentsline{section}{{\bf NFcore::ReactionClass} (Abstract Base Class that defines the interface for all reaction rules )}{\pageref{classNFcore_1_1ReactionClass}}{}
\item\contentsline{section}{{\bf NFcore::RemoveMoleculeTransform} }{\pageref{classNFcore_1_1RemoveMoleculeTransform}}{}
\item\contentsline{section}{{\bf NFcore::SpeciesCreator} }{\pageref{classNFcore_1_1SpeciesCreator}}{}
\item\contentsline{section}{{\bf NFcore::StateChangeTransform} }{\pageref{classNFcore_1_1StateChangeTransform}}{}
\item\contentsline{section}{{\bf NFcore::StateCounter} }{\pageref{classNFcore_1_1StateCounter}}{}
\item\contentsline{section}{{\bf NFcore::System} (The main class that begins and runs simulations )}{\pageref{classNFcore_1_1System}}{}
\item\contentsline{section}{{\bf NFcore::TemplateMolecule} (Used for matching \doxyref{Molecule}{p.}{classNFcore_1_1Molecule} objects to the given pattern )}{\pageref{classNFcore_1_1TemplateMolecule}}{}
\item\contentsline{section}{{\bf TiXmlAttribute} }{\pageref{classTiXmlAttribute}}{}
\item\contentsline{section}{{\bf TiXmlAttributeSet} }{\pageref{classTiXmlAttributeSet}}{}
\item\contentsline{section}{{\bf TiXmlBase} }{\pageref{classTiXmlBase}}{}
\item\contentsline{section}{{\bf TiXmlComment} }{\pageref{classTiXmlComment}}{}
\item\contentsline{section}{{\bf TiXmlCursor} }{\pageref{structTiXmlCursor}}{}
\item\contentsline{section}{{\bf TiXmlDeclaration} }{\pageref{classTiXmlDeclaration}}{}
\item\contentsline{section}{{\bf TiXmlDocument} }{\pageref{classTiXmlDocument}}{}
\item\contentsline{section}{{\bf TiXmlElement} }{\pageref{classTiXmlElement}}{}
\item\contentsline{section}{{\bf TiXmlHandle} }{\pageref{classTiXmlHandle}}{}
\item\contentsline{section}{{\bf TiXmlNode} }{\pageref{classTiXmlNode}}{}
\item\contentsline{section}{{\bf TiXmlOutStream} }{\pageref{classTiXmlOutStream}}{}
\item\contentsline{section}{{\bf TiXmlParsingData} }{\pageref{classTiXmlParsingData}}{}
\item\contentsline{section}{{\bf TiXmlPrinter} }{\pageref{classTiXmlPrinter}}{}
\item\contentsline{section}{{\bf TiXmlString} }{\pageref{classTiXmlString}}{}
\item\contentsline{section}{{\bf TiXmlText} }{\pageref{classTiXmlText}}{}
\item\contentsline{section}{{\bf TiXmlUnknown} }{\pageref{classTiXmlUnknown}}{}
\item\contentsline{section}{{\bf TiXmlVisitor} }{\pageref{classTiXmlVisitor}}{}
\item\contentsline{section}{{\bf NFcore::Transformation} }{\pageref{classNFcore_1_1Transformation}}{}
\item\contentsline{section}{{\bf NFcore::TransformationFactory} }{\pageref{classNFcore_1_1TransformationFactory}}{}
\item\contentsline{section}{{\bf NFcore::TransformationSet} (Maintains a set of \doxyref{Transformation}{p.}{classNFcore_1_1Transformation} objects for a \doxyref{ReactionClass}{p.}{classNFcore_1_1ReactionClass} )}{\pageref{classNFcore_1_1TransformationSet}}{}
\item\contentsline{section}{{\bf NFcore::UnbindingTransform} }{\pageref{classNFcore_1_1UnbindingTransform}}{}
\end{CompactList}
